{
  "_id": "6aafb8f13d719c1f8408130c",
  "Package": "gpmap",
  "Type": "Package",
  "Title": "Analysing and Plotting Genotype-Phenotype Maps",
  "Version": "0.1.3",
  "Date": "2025-11-27",
  "Authors@R": "c(person(given = c(\"Arne\", \"B.\"), family = \"Gjuvsland\",\nrole = c(\"aut\", \"cre\"),email = \"arne.gjuvsland@nmbu.no\"),\nperson(given = \"Yunpeng\", family = \"Wang\", role = \"aut\",\nemail = \"yunpeng.wng@gmail.com\"))",
  "Description": "Tools for studying genotype-phenotype maps for bi-allelic\nloci underlying quantitative phenotypes. The 0.1 version is\nreleased in connection with the publication of Gjuvsland et al\n(2013) and implements basic line plots and the monotonicity\nmeasures for GP maps presented in the paper. Reference:\nGjuvsland AB, Wang Y, Plahte E and Omholt SW (2013)\nMonotonicity is a key feature of genotype-phenotype maps.\nFrontier in Genetics 4:216 <doi:10.3389/fgene.2013.00216>.",
  "License": "GPL-3",
  "LazyLoad": "yes",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-20 10:40:24 UTC",
    "User": "root"
  },
  "Author": "Arne B. Gjuvsland [aut, cre], Yunpeng Wang [aut]",
  "Maintainer": "Arne B. Gjuvsland <arne.gjuvsland@nmbu.no>",
  "Repository": "https://argju.r-universe.dev",
  "Date/Publication": "2025-11-27 19:00:06 UTC",
  "RemoteUrl": "https://github.com/cran/gpmap",
  "RemoteRef": "HEAD",
  "RemoteSha": "925f1686aec00e080d649b47b58f4c0181c31845",
  "_user": "argju",
  "_type": "src",
  "_file": "gpmap_0.1.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/8691d65f6c3d7a5cc0f8634d4b14677df6311abb0a0e5789608253b1aaf1ee3c",
  "_filesize": 181568,
  "_sha256": "8691d65f6c3d7a5cc0f8634d4b14677df6311abb0a0e5789608253b1aaf1ee3c",
  "_expires": "2026-12-29T10:44:00.000Z",
  "_created": "2026-09-20T10:40:24.000Z",
  "_published": "2026-09-20T10:44:01.696Z",
  "_jobs": [
    {
      "job": 106065132833,
      "time": 131,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10604055606"
    },
    {
      "job": 106065132800,
      "time": 165,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10603259463"
    },
    {
      "job": 106065132799,
      "time": 156,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10603314420"
    },
    {
      "job": 106065132867,
      "time": 173,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10603169838"
    },
    {
      "job": 106064717948,
      "time": 204,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10603524136"
    },
    {
      "job": 106065132820,
      "time": 109,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10603054841"
    },
    {
      "job": 106065132807,
      "time": 80,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10604050508"
    },
    {
      "job": 106065132880,
      "time": 79,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10603504117"
    },
    {
      "job": 106065132801,
      "time": 74,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10604145908"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110",
  "_status": "success",
  "_upstream": "https://github.com/cran/gpmap",
  "_commit": {
    "id": "925f1686aec00e080d649b47b58f4c0181c31845",
    "author": "Arne B. Gjuvsland <arne.gjuvsland@nmbu.no>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.3\n",
    "time": 1764270006
  },
  "_maintainer": {
    "name": "Arne B. Gjuvsland",
    "email": "arne.gjuvsland@nmbu.no",
    "login": "argju",
    "description": "",
    "uuid": 988012
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "isotone",
      "role": "Depends"
    },
    {
      "package": "plyr",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Depends"
    },
    {
      "package": "foreach",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-48",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.3",
      "date": "2025-11-27"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "argju",
      "count": 3,
      "uuid": 988012
    }
  ],
  "_userbio": {
    "uuid": 988012,
    "type": "user",
    "name": "argju",
    "followers": 5
  },
  "_downloads": {
    "count": 278,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gpmap"
  },
  "_mentions": 2,
  "_searchresults": 13,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/gpmap.html",
    "extra/manual.pdf"
  ],
  "_realowner": "argju",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1",
      "date": "2013-08-22"
    },
    {
      "version": "0.1.1",
      "date": "2014-01-09"
    },
    {
      "version": "0.1.2",
      "date": "2021-02-16"
    },
    {
      "version": "0.1.3",
      "date": "2025-11-27"
    }
  ],
  "_exports": [
    "decompose_monotone",
    "decompose_monotone_single",
    "degree_of_monotonicity",
    "degree_of_monotonicity_single",
    "enumerate_genotypes",
    "generate_gpmap",
    "monotone_regression",
    "partial_genotype_order"
  ],
  "_datasets": [
    {
      "name": "A",
      "title": "Dataset containing example GP maps",
      "object": "GPmaps",
      "file": "GPmaps.RData",
      "class": [
        "gpmap"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "AA",
      "title": "Dataset containing example GP maps",
      "object": "GPmaps",
      "file": "GPmaps.RData",
      "class": [
        "gpmap"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "AD",
      "title": "Dataset containing example GP maps",
      "object": "GPmaps",
      "file": "GPmaps.RData",
      "class": [
        "gpmap"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "D",
      "title": "Dataset containing example GP maps",
      "object": "GPmaps",
      "file": "GPmaps.RData",
      "class": [
        "gpmap"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "DA",
      "title": "Dataset containing example GP maps",
      "object": "GPmaps",
      "file": "GPmaps.RData",
      "class": [
        "gpmap"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "DD",
      "title": "Dataset containing example GP maps",
      "object": "GPmaps",
      "file": "GPmaps.RData",
      "class": [
        "gpmap"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mouseweight",
      "title": "Dataset containing example GP maps",
      "object": "GPmaps",
      "file": "GPmaps.RData",
      "class": [
        "gpmap"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "gpmap-package",
      "title": "Tools for analysing and plotting genotype-phenotype maps",
      "concept": [
        "genotype-phenotype map",
        "monotonicity",
        "functional epistasis"
      ],
      "topics": [
        "gpmap-package"
      ]
    },
    {
      "page": "decompose_monotone",
      "title": "Decompose genotype-phenotype map(s) using monotone regression",
      "topics": [
        "decompose_monotone",
        "decompose_monotone_single"
      ]
    },
    {
      "page": "degree_of_monotonicity",
      "title": "Degree of monotonicity of GP map",
      "topics": [
        "degree_of_monotonicity",
        "degree_of_monotonicity_single"
      ]
    },
    {
      "page": "enumerate_genotypes",
      "title": "Function for enumerating genotypes for N biallelic loci",
      "topics": [
        "enumerate_genotypes"
      ]
    },
    {
      "page": "generate_gpmap",
      "title": "Function for creating genotype-phenotype (GP) maps",
      "topics": [
        "generate_gpmap",
        "gpmap"
      ]
    },
    {
      "page": "GPmaps",
      "title": "Dataset containing example GP maps",
      "topics": [
        "A",
        "AA",
        "AD",
        "D",
        "DA",
        "DD",
        "mouseweight"
      ]
    },
    {
      "page": "monotone_regression",
      "title": "Perform monotone regression on a genotype-phenotype (GP) map",
      "topics": [
        "monotone_regression"
      ]
    },
    {
      "page": "partial_genotype_order",
      "title": "Generate partial ordering of genotype space based from allele content of genotypes",
      "topics": [
        "partial_genotype_order"
      ]
    },
    {
      "page": "plot.gpmap",
      "title": "Functions for creating lineplots of genotype-phenotype (GP) maps",
      "topics": [
        "plot.gpmap",
        "plot.gpmap.decomp.mono"
      ]
    },
    {
      "page": "print.gpmap",
      "title": "Print function for 'gpmap' objects",
      "topics": [
        "print.gpmap"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "codetools",
    "cpp11",
    "farver",
    "foreach",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "isotone",
    "iterators",
    "labeling",
    "lifecycle",
    "nnls",
    "plyr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 1.414973347970818,
  "_indexed": true,
  "_nocasepkg": "gpmap",
  "_universes": [
    "argju"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.3",
      "date": "2026-09-20T10:42:27.000Z",
      "distro": "resolute",
      "commit": "925f1686aec00e080d649b47b58f4c0181c31845",
      "fileid": "https://r2.ropensci.org/42c21c33ad13e3e9a78119d28481bf9e43047285211d51410abc07b11bafeba8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.3",
      "date": "2026-09-20T10:43:04.000Z",
      "distro": "resolute",
      "commit": "925f1686aec00e080d649b47b58f4c0181c31845",
      "fileid": "https://r2.ropensci.org/eec94ae5cc021c523637a3e89c12d8e8571ced505fcafc97630d3001b006ca1f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.3",
      "date": "2026-09-20T10:42:29.000Z",
      "commit": "925f1686aec00e080d649b47b58f4c0181c31845",
      "fileid": "https://r2.ropensci.org/7587cbfeb6428ca0b221fe6222046f1f154e131a38cd841a00a8be77563dddd9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.3",
      "date": "2026-09-20T10:42:35.000Z",
      "commit": "925f1686aec00e080d649b47b58f4c0181c31845",
      "fileid": "https://r2.ropensci.org/32ad29113b20a9b8b0995a38590b3bdad7c5af15f23bfedd57f558b0e6a156e0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.3",
      "date": "2026-09-20T10:42:30.000Z",
      "commit": "925f1686aec00e080d649b47b58f4c0181c31845",
      "fileid": "https://r2.ropensci.org/d534f7e7e485d8d24ce01c70a02f14bd203b92266a87a7f7ab3a537cc2f097d8",
      "status": "success",
      "buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.3",
      "date": "2026-09-20T10:41:33.000Z",
      "commit": "925f1686aec00e080d649b47b58f4c0181c31845",
      "fileid": "https://r2.ropensci.org/e2f5526dbc3058f1645e48fe3792a9cefeb8b2749c6c17644ad1d8a89e3490dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.3",
      "date": "2026-09-20T10:41:31.000Z",
      "commit": "925f1686aec00e080d649b47b58f4c0181c31845",
      "fileid": "https://r2.ropensci.org/03d01d4022b1ac8a506b614ee139c95ec76d9351c4f05261cf541b20027288f9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.3",
      "date": "2026-09-20T10:41:27.000Z",
      "commit": "925f1686aec00e080d649b47b58f4c0181c31845",
      "fileid": "https://r2.ropensci.org/cf736b5c6089ea8eabeb07d06dd5a0541178a47e798e0c9b5c282eedc8b1159d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/argju/actions/runs/35505566110"
    }
  ]
}